| 1 | Domenic Di RiccoCF, PMenlo-Atherton (Atherton) | 0.605 | 99 | 46 | 76 | 12 | 3 | 1 | 28 |
| 2 | Colin BryanSSGunderson (San Jose) | 0.547 | 65 | 29 | 53 | 4 | 3 | 0 | 18 |
| 3 | Joe BlankCF, PDel Mar (San Jose) | 0.538 | 97 | 42 | 78 | 10 | 0 | 4 | 26 |
| 4 | Chris WatkinsP, SSSilver Creek (San Jose) | 0.506 | 98 | 40 | 79 | 8 | 0 | 5 | 27 |
| 5 | Michael CorrP, 3BMore (San Jose) | 0.491 | 77 | 26 | 53 | 3 | 2 | 3 | 22 |
| 6 | Travis Rose3B, 2BSilver Creek (San Jose) | 0.487 | 96 | 37 | 76 | 8 | 2 | 3 | 25 |
| 7 | Blake CornishOFCarmel | 0.487 | 43 | 19 | 39 | 2 | 2 | 1 | 25 |
| 8 | Ivan TorunoOverfelt (San Jose) | 0.484 | 106 | 44 | 91 | 12 | 3 | 0 | 25 |
| 9 | Zach Dunagan3B, PHill (San Jose) | 0.472 | 41 | 17 | 36 | 4 | 1 | 1 | 12 |
| 10 | Jason MartinP, SSHarker (San Jose) | 0.466 | 76 | 27 | 58 | 5 | 2 | 2 | 21 |
| 11 | Michael ChaconOverfelt (San Jose) | 0.462 | 61 | 24 | 52 | 3 | 2 | 0 | 16 |
| 12 | Daniel SelwayP, SSMore (San Jose) | 0.453 | 86 | 29 | 64 | 6 | 4 | 2 | 22 |
| 13 | Jeff FoudyOF, 2BCarmel | 0.450 | 98 | 36 | 80 | 7 | 0 | 4 | 32 |
| 14 | Chris SkinnerINFDel Mar (San Jose) | 0.448 | 35 | 13 | 29 | 5 | 0 | 0 | 10 |
| 15 | Craig Vandervort3B, PCarmel | 0.446 | 92 | 33 | 74 | 4 | 0 | 2 | 33 |
| 16 | Nick Palermo1B, PDel Mar (San Jose) | 0.444 | 98 | 40 | 90 | 8 | 6 | 5 | 26 |
| 17 | Kyle Kretchmer1B, PCarmel | 0.442 | 107 | 38 | 86 | 5 | 0 | 13 | 32 |
| 18 | Jordan FanaraSS, PNVBHS (Santa Clara) | 0.441 | 48 | 15 | 34 | 3 | 0 | 0 | 11 |
| 19 | Steven HopINFOak Grove (San Jose) | 0.439 | 76 | 25 | 57 | 2 | 0 | 0 | 26 |
| 20 | Rigoberto VelezOverfelt (San Jose) | 0.438 | 98 | 35 | 80 | 6 | 4 | 1 | 24 |
| 21 | Nick SantyOFCarmel | 0.432 | 52 | 19 | 44 | 2 | 0 | 0 | 31 |
| 22 | Anthony Zappia3B, PSan Jose | 0.431 | 57 | 22 | 51 | 3 | 0 | 0 | 18 |
| 23 | Jeff RamirezSS, CFEl Camino | 0.429 | 80 | 30 | 70 | 4 | 4 | 3 | 21 |
| 24 | Ryan Scoma2B, LFCarlmont (Belmont) | 0.426 | 87 | 29 | 68 | 7 | 1 | 1 | 25 |
| 25 | Gregg Ringold2B, PHarker (San Jose) | 0.426 | 77 | 29 | 68 | 6 | 0 | 0 | 21 |
| 26 | Danny DetarLF, CMore (San Jose) | 0.424 | 44 | 14 | 33 | 1 | 1 | 0 | 18 |
| 27 | Matt SlatonC, PLeland (San Jose) | 0.421 | 91 | 32 | 76 | 6 | 0 | 7 | 27 |
| 28 | Brian Wendt3BLeigh (San Jose) | 0.419 | 94 | 36 | 86 | 7 | 0 | 3 | 28 |
| 29 | David KleinC, SSMenlo-Atherton (Atherton) | 0.419 | 89 | 31 | 74 | 8 | 1 | 0 | 23 |
| 30 | Vincent CruzOverfelt (San Jose) | 0.417 | 98 | 35 | 84 | 8 | 1 | 0 | 25 |
| 31 | Michael JorgensonOFMenlo-Atherton (Atherton) | 0.415 | 94 | 34 | 82 | 2 | 2 | 0 | 24 |
| 32 | Jesse Van SickleCDel Mar (San Jose) | 0.413 | 80 | 31 | 75 | 7 | 1 | 0 | 23 |
| 33 | Ryan Fender3B, PEl Camino | 0.410 | 97 | 32 | 78 | 5 | 2 | 1 | 25 |
| 34 | Louie SakodaOF, PBranham (San Jose) | 0.410 | 88 | 34 | 83 | 4 | 1 | 3 | 27 |
| 35 | Ben ShapiroP, SSHarker (San Jose) | 0.410 | 74 | 25 | 61 | 2 | 0 | 0 | 20 |
| 36 | Darren GobinP, OFLeigh (San Jose) | 0.409 | 73 | 27 | 66 | 3 | 0 | 3 | 23 |
| 37 | Peter EstesC, DHSalinas | 0.404 | 75 | 23 | 57 | 2 | 0 | 0 | 28 |
| 38 | Shane Arslan1B, PBurlingame | 0.400 | 92 | 30 | 75 | 6 | 6 | 3 | 27 |
| 39 | Casey JuullProspect (Saratoga) | 0.400 | 72 | 22 | 55 | 7 | 0 | 1 | 18 |
| 40 | Curtis VanwaardenbergProspect (Saratoga) | 0.396 | 51 | 19 | 48 | 5 | 0 | 0 | 13 |
| 41 | Tim KolstadINFDel Mar (San Jose) | 0.393 | 69 | 22 | 56 | 7 | 0 | 0 | 22 |
| 42 | Kevin VyeP, OFOak Grove (San Jose) | 0.393 | 66 | 22 | 56 | 1 | 1 | 0 | 26 |
| 43 | Miguel Rodriguez3B, PYerba Buena (San Jose) | 0.391 | 99 | 36 | 92 | 5 | 1 | 0 | 27 |
| 44 | Clark HagmanLF, CFMenlo-Atherton (Atherton) | 0.388 | 107 | 38 | 98 | 5 | 2 | 2 | 28 |
| 45 | Tyler DerbyCF, PLeigh (San Jose) | 0.387 | 89 | 29 | 75 | 8 | 1 | 0 | 28 |
| 46 | Jason MarkovitzP, 1BHarbor (Santa Cruz) | 0.383 | 65 | 18 | 47 | 1 | 2 | 2 | 23 |
| 47 | Kris NelsonCF, PHill (San Jose) | 0.382 | 41 | 13 | 34 | 1 | 1 | 0 | 14 |
| 48 | Adrian Mull1BLeigh (San Jose) | 0.381 | 88 | 24 | 63 | 3 | 0 | 0 | 28 |
| 49 | Chris Healey2B, 3BSalinas | 0.380 | 94 | 30 | 79 | 10 | 2 | 1 | 29 |
| 50 | Will KleinINFSequoia (Redwood City) | 0.378 | 96 | 31 | 82 | 6 | 1 | 2 | 25 |