| 1 | Curran BledsoeRHP, INFUCHS (San Diego) | 63 | 172 | 50.1 | 26 |
| 2 | Jason RussellCF, LHPCanyon Hills (San Diego) | 60 | 98 | 53.0 | 26 |
| 3 | Julian ValenciaLHP, 1BMira Mesa (San Diego) | 53 | 296 | 70.2 | 21 |
| 4 | Brandon ToddRHP, 1BCanyon Hills (San Diego) | 52 | 108 | 60.0 | 27 |
| 5 | Zerek ZamoraLHP, OFMira Mesa (San Diego) | 52 | 291 | 63.0 | 27 |
| 6 | Jack ClarkOF, LHPUCHS (San Diego) | 50 | 143 | 39.1 | 24 |
| 7 | Zavier AndersonINF, PSan Diego | 39 | 0 | 63.0 | 27 |
| 8 | Manny MirandaP, INFSan Diego | 35 | 0 | 30.0 | 16 |
| 9 | Vicente MoraC, RHPMorse (San Diego) | 34 | 174 | 34.1 | 22 |
| 10 | Alex LeyvaSS, RHPMorse (San Diego) | 33 | 159 | 31.2 | 24 |
| 11 | Ben RannazzisiLHP, OFCanyon Hills (San Diego) | 32 | 51 | 29.1 | 28 |
| 12 | Diego SesmaLF, RHPMorse (San Diego) | 27 | 173 | 35.1 | 25 |
| 13 | Bostyn PallamaryP, OFMission Bay (San Diego) | 26 | 198 | 45.1 | 16 |
| 14 | Santiago AlvesINF, PSan Diego | 24 | 10 | 26.0 | 19 |
| 15 | Garret GillumINF, RHPUCHS (San Diego) | 24 | 38 | 10.0 | 16 |
| 16 | Harold GildehausPMission Bay (San Diego) | 23 | 223 | 54.1 | 20 |
| 17 | Tyler Lejarraga3B, RHPCanyon Hills (San Diego) | 23 | 45 | 21.2 | 24 |
| 18 | Mateo TorresOF, LHPUCHS (San Diego) | 22 | 88 | 19.1 | 25 |
| 19 | Isaac TrujilloP, 3BMission Bay (San Diego) | 21 | 74 | 15.1 | 24 |
| 20 | Van PlaymanP, INFMission Bay (San Diego) | 18 | 87 | 20.0 | 19 |
| 21 | Moises DavisonCF, RHPMorse (San Diego) | 17 | 51 | 12.1 | 11 |
| 22 | Marviel UnderwoodUTIL, RHPUCHS (San Diego) | 16 | 117 | 25.2 | 17 |
| 23 | Charles HawkinsRHP, OFCanyon Hills (San Diego) | 16 | 36 | 16.1 | 23 |
| 24 | Alan SandovalINF, PSan Diego | 15 | 0 | 15.0 | 23 |
| 25 | Chris MarquezINF, RHPMorse (San Diego) | 13 | 100 | 22.1 | 19 |
| 26 | Hyugo HortonRHP, OFUCHS (San Diego) | 12 | 73 | 17.2 | 16 |
| 27 | Cassius CampbellLHP, 1BCanyon Hills (San Diego) | 9 | 20 | 5.1 | 14 |
| 28 | William Bovee3B, PMira Mesa (San Diego) | 9 | 76 | 17.2 | 23 |
| 29 | Tyson BoboOF, RHPUCHS (San Diego) | 9 | 26 | 4.2 | 25 |
| 30 | Gabe YurinaINF, OFMira Mesa (San Diego) | 7 | 70 | 12.2 | 19 |
| 31 | Julian OregelC, INFSan Diego | 6 | 0 | 14.2 | 24 |
| 32 | Chris WeidmanPMission Bay (San Diego) | 6 | 33 | 7.0 | 10 |
| 33 | Carson HildebrandtRHPUCHS (San Diego) | 6 | 30 | 6.1 | 2 |
| 34 | Marcus Gonzales3B, RHPMorse (San Diego) | 5 | 51 | 9.2 | 17 |
| 35 | Michael ChavollaOF, RHPMira Mesa (San Diego) | 5 | 16 | 6.2 | 28 |
| 36 | Mike Yancy IIICFMorse (San Diego) | 5 | 30 | 6.0 | 13 |
| 37 | Dylan GriffinOF, RHPUCHS (San Diego) | 5 | 18 | 4.1 | 20 |
| 38 | David Simmons2B, SSMorse (San Diego) | 5 | 37 | 9.2 | 14 |
| 39 | Cole MurphyPSan Diego | 4 | 0 | 4.0 | 2 |
| 40 | Kory RoachOF, PMission Bay (San Diego) | 4 | 34 | 6.1 | 9 |
| 41 | Aidan HochmanOF, INFSan Diego | 4 | 0 | 3.0 | 27 |
| 42 | Danny UnderwoodCF, RHPMira Mesa (San Diego) | 4 | 48 | 12.0 | 28 |
| 43 | Obed Gonzalez1B, LHPMorse (San Diego) | 4 | 15 | 3.0 | 24 |
| 44 | Henry HamptonINF, PMission Bay (San Diego) | 3 | 31 | 6.1 | 21 |
| 45 | Tristan AguonOF, PMira Mesa (San Diego) | 3 | 14 | 3.0 | 13 |
| 46 | Jorge Munoz3B, 1BMorse (San Diego) | 3 | 20 | 4.1 | 7 |
| 47 | Cesar CisnerosINF, PSan Diego | 2 | 0 | 2.0 | 26 |
| 48 | Josh AsuncionINF, OFMira Mesa (San Diego) | 2 | 18 | 4.0 | 28 |
| 49 | Aidan Nguyen3B, 2BMira Mesa (San Diego) | 1 | 7 | 1.0 | 25 |
| 50 | Nicolas HernandezCCanyon Hills (San Diego) | 1 | 0 | 1.0 | 28 |
