| 1 | David HendersonRB, DBLincoln (San Francisco) | 851 | 141.8 | 8.86 | 96 | 82 | 12 | 0 | 6 |
| 2 | Von GenieveRB, DBLincoln (San Francisco) | 637 | 63.7 | 7.68 | 83 | 80 | 7 | 0 | 10 |
| 3 | Robert BoldenMarshall (San Francisco) | 385 | 77.0 | 4.87 | 79 | 27 | 1 | 0 | 5 |
| 4 | Philip SternWB, DBLowell (San Francisco) | 272 | 90.7 | 6.97 | 39 | 15 | 2 | 0 | 3 |
| 5 | Kevin RobinsonRB, DBLincoln (San Francisco) | 263 | 43.8 | 5.06 | 52 | 0 | 3 | 0 | 6 |
| 6 | Philipe LewisRB, LBLincoln (San Francisco) | 261 | 23.7 | 3.35 | 78 | 0 | 8 | 0 | 11 |
| 7 | Chris FungRB, OLBBurton (San Francisco) | 236 | 26.2 | 2.99 | 79 | 33 | 1 | 0 | 9 |
| 8 | Mike PaolucciWR, DBLincoln (San Francisco) | 145 | 13.2 | 29.00 | 5 | 0 | 1 | 0 | 11 |
| 9 | Antonio JonesG, DEBurton (San Francisco) | 106 | 15.1 | 5.58 | 19 | 30 | 0 | 0 | 7 |
| 10 | Jerray WintersWR, DBLincoln (San Francisco) | 92 | 15.3 | 7.67 | 12 | 0 | 0 | 0 | 6 |
| 11 | Isa'ako TagaloaRB, DBBurton (San Francisco) | 83 | 13.8 | 1.69 | 49 | 10 | 0 | 0 | 6 |
| 12 | Larry AndersonBurton (San Francisco) | 80 | 26.7 | 2.58 | 31 | 0 | 0 | 0 | 3 |
| 13 | Jairo RuedaFB, MLBLowell (San Francisco) | 78 | 26.0 | 7.80 | 10 | 33 | 2 | 0 | 3 |
| 14 | Cole MitgTE, DELowell (San Francisco) | 78 | 26.0 | 4.59 | 17 | 11 | 1 | 0 | 3 |
| 15 | Andrew LooQB, DBLincoln (San Francisco) | 72 | 6.5 | 6.00 | 12 | 40 | 1 | 0 | 11 |
| 16 | James BoyerMarshall (San Francisco) | 62 | 12.4 | 2.48 | 25 | 8 | 0 | 0 | 5 |
| 17 | Tobias HelmMarshall (San Francisco) | 60 | 10.0 | 2.50 | 24 | 16 | 0 | 0 | 6 |
| 18 | Anurat RojanapairatFB, DTLowell (San Francisco) | 58 | 19.3 | 4.83 | 12 | 8 | 0 | 0 | 3 |
| 19 | Marcos CronanderFB, LBLowell (San Francisco) | 49 | 16.3 | 4.90 | 10 | 14 | 0 | 0 | 3 |
| 20 | Jsymel TiongsonRB, DBLincoln (San Francisco) | 49 | 4.5 | 3.77 | 13 | 0 | 0 | 0 | 11 |
| 21 | David DelgadoRB, LBLincoln (San Francisco) | 43 | 14.3 | 7.17 | 6 | 0 | 0 | 0 | 3 |
| 22 | Raymond WongFB, LBLowell (San Francisco) | 41 | 13.7 | 5.12 | 8 | 12 | 0 | 0 | 3 |
| 23 | Marlon AyalaT, DLBurton (San Francisco) | 35 | 8.8 | 4.38 | 8 | 0 | 0 | 0 | 4 |
| 24 | Lonnell BrittonBurton (San Francisco) | 35 | 7.0 | 1.94 | 18 | 4 | 0 | 0 | 5 |
| 25 | Mike CoreaRB, LBLincoln (San Francisco) | 32 | 3.6 | 8.00 | 4 | 0 | 1 | 0 | 9 |
| 26 | Travis BordenRB, LBBurton (San Francisco) | 26 | 4.3 | 1.73 | 15 | 0 | 0 | 0 | 6 |
| 27 | Brian YangQB, CBBurton (San Francisco) | 21 | 2.6 | 0.64 | 33 | 0 | 0 | 0 | 8 |
| 28 | Cadarin HowardMarshall (San Francisco) | 18 | 6.0 | 1.20 | 15 | 8 | 0 | 0 | 3 |
| 29 | Adam AuTE, DBLincoln (San Francisco) | 13 | 1.2 | 6.50 | 2 | 0 | 0 | 0 | 11 |
| 30 | Eric FooteRB, LBLincoln (San Francisco) | 13 | 1.4 | 2.17 | 6 | 0 | 1 | 0 | 9 |
| 31 | Chris CruzFB, LBBurton (San Francisco) | 3 | 0.4 | 3.00 | 1 | 0 | 0 | 0 | 7 |
| 32 | Willson TaMarshall (San Francisco) | 3 | 1.0 | 0.75 | 4 | 2 | 0 | 0 | 3 |
| 33 | Carter RockwellQB, LBLowell (San Francisco) | 2 | 0.7 | 2.00 | 1 | 2 | 0 | 0 | 3 |
| 34 | Eleasaro NuiatoaMarshall (San Francisco) | 2 | 0.7 | 1.00 | 2 | 2 | 0 | 0 | 3 |