| 1 | Kyle MorenusQBSidney | 2132 | 164.0 | 108 | 192 | 0.562 | 33 | 10 | 113 | 13 |
| 2 | Erik AnderwkavichQBHoly Cross (Flushing) | 2093 | 232.6 | 128 | 189 | 0.677 | 24 | 0 | 144 | 9 |
| 3 | Rodmann CrenshawQBWadleigh (New York) | 1846 | 230.8 | 85 | 172 | 0.494 | 20 | 9 | 105 | 8 |
| 4 | Tj CzeskiQB, FSAmsterdam | 1618 | 124.5 | 110 | 187 | 0.588 | 25 | 5 | 116 | 13 |
| 5 | William TitusQBFordham Prep (Bronx) | 1547 | 154.7 | 83 | 184 | 0.451 | 16 | 10 | 81 | 10 |
| 6 | Adam BarrettQB, SSAvon | 1547 | 171.9 | 79 | 161 | 0.491 | 15 | 10 | 88 | 9 |
| 7 | Sean MaraQBIona Prep (New Rochelle) | 1498 | 136.2 | 96 | 202 | 0.475 | 12 | 2 | 88 | 11 |
| 8 | Terry StonerQB, LBWFHS (Mastic Beach) | 1469 | 133.5 | 94 | 172 | 0.547 | 15 | 6 | 98 | 11 |
| 9 | Tim RommelQB, DBHenninger (Syracuse) | 1468 | 163.1 | 91 | 130 | 0.700 | 10 | 5 | 117 | 9 |
| 10 | Mark MorrisQB, DBProctor (Utica) | 1461 | 162.3 | 82 | 166 | 0.494 | 9 | 10 | 73 | 9 |
| 11 | Niquaan GaymonQBLincoln (Brooklyn) | 1449 | 144.9 | 110 | 186 | 0.591 | 11 | 10 | 81 | 10 |
| 12 | Andrew DisantoQB, DBClyde-Savannah (Clyde) | 1400 | 155.6 | 86 | 161 | 0.534 | 12 | 11 | 79 | 9 |
| 13 | Christopher EanuzelQBSt. Anthony's (Melville) | 1348 | 122.5 | 56 | 108 | 0.519 | 15 | 2 | 129 | 11 |
| 14 | Rob ZappiaQB, SGreece Athena (Rochester) | 1316 | 146.2 | 96 | 166 | 0.578 | 11 | 9 | 83 | 9 |
| 15 | Jeffrey LegreeQB, DBFort Hamilton (Brooklyn) | 1305 | 108.8 | 87 | 157 | 0.554 | 17 | 6 | 103 | 12 |
| 16 | David LegreeQBSouth Shore (Brooklyn) | 1283 | 128.3 | 82 | 171 | 0.480 | 13 | 6 | 84 | 10 |
| 17 | Rob SiebertQB, SSBHS (Briarcliff Manor) | 1281 | 142.3 | 94 | 200 | 0.470 | 11 | 7 | 72 | 9 |
| 18 | Ryan WashburnQB, LBSchuylerville | 1206 | 100.5 | 66 | 163 | 0.405 | 10 | 10 | 62 | 12 |
| 19 | John TruncaleQBOLLHS (Poughkeepsie) | 1201 | 120.1 | 50 | 108 | 0.463 | 10 | 5 | 99 | 10 |
| 20 | Ryan CarpenterQB, DBFort Edward | 1178 | 168.3 | 51 | 96 | 0.531 | 14 | 3 | 124 | 7 |
| 21 | Brian DevinsFS, QBNotre Dame (Utica) | 1153 | 115.3 | 78 | 155 | 0.503 | 9 | 10 | 67 | 10 |
| 22 | Ryan BreierQB, SGrand Island | 1131 | 113.1 | 77 | 147 | 0.524 | 7 | 7 | 74 | 10 |
| 23 | Kurt SpearQB, DBGreene | 1123 | 140.4 | 79 | 137 | 0.577 | 15 | 6 | 103 | 8 |
| 24 | Brian AndinoQB, WRWagner (Staten Island) | 1082 | 98.4 | 72 | 135 | 0.533 | 11 | 14 | 68 | 11 |
| 25 | Damien CranceQBKennedy (Cheektowaga) | 1070 | 118.9 | 61 | 113 | 0.540 | 8 | 5 | 92 | 9 |
| 26 | Kevin StockelQB, DBJohn Jay (Cross River) | 1064 | 106.4 | 62 | 128 | 0.484 | 10 | 4 | 90 | 10 |
| 27 | Tim HudsonOneida | 1063 | 151.9 | 63 | 166 | 0.380 | 9 | 10 | 53 | 7 |
| 28 | Byron MulkeyNWHS (Sanborn) | 1058 | 117.6 | 73 | 164 | 0.445 | 14 | 7 | 77 | 9 |
| 29 | Mike MathewsQB, DBFox Lane (Bedford) | 1033 | 114.8 | 86 | 171 | 0.503 | 12 | 6 | 78 | 9 |
| 30 | Stephen MeysQBASHS (White Plains) | 1022 | 102.2 | 107 | 186 | 0.575 | 8 | 9 | 67 | 10 |
| 31 | Tyleek JonesGrady (Brooklyn) | 1005 | 91.4 | 37 | 75 | 0.493 | 9 | 3 | 118 | 11 |
| 32 | Jimmy MoloneySWHS (Lake Huntington) | 990 | 90.0 | 59 | 130 | 0.454 | 9 | 4 | 82 | 11 |
| 33 | Justin McGheeQB, CBNew Rochelle | 979 | 97.9 | 56 | 128 | 0.438 | 11 | 14 | 59 | 10 |
| 34 | Joseph VazquezQB, SSNew Utrecht (Brooklyn) | 964 | 107.1 | 68 | 153 | 0.444 | 9 | 12 | 52 | 9 |
| 35 | Dena BarnesBishop Ford (Brooklyn) | 955 | 86.8 | 44 | 101 | 0.436 | 10 | 5 | 90 | 11 |
| 36 | Adam McMullenQB, DBBatavia | 953 | 119.1 | 58 | 103 | 0.563 | 11 | 8 | 91 | 8 |
| 37 | Tyler FandlQBArlington (LaGrangeville) | 927 | 103.0 | 67 | 151 | 0.444 | 11 | 6 | 72 | 9 |
| 38 | Eric BaxterQB, DBPoughkeepsie | 910 | 91.0 | 65 | 120 | 0.542 | 9 | 8 | 76 | 10 |
| 39 | Donato SpinaQB, LBSVHS (Sauquoit) | 900 | 100.0 | 49 | 112 | 0.438 | 4 | 5 | 65 | 9 |
| 40 | Jack DonnellyRye | 886 | 73.8 | 46 | 73 | 0.630 | 14 | 1 | 139 | 12 |
| 41 | Chris WickhamQB, CBWhitman (Rushville) | 882 | 73.5 | 62 | 102 | 0.608 | 11 | 9 | 88 | 12 |
| 42 | Josh CovingtonQB, CBRiverside (Buffalo) | 871 | 96.8 | 58 | 115 | 0.504 | 14 | 5 | 97 | 9 |
| 43 | Alan SmigelskisQB, LBGates Chili (Rochester) | 863 | 95.9 | 58 | 120 | 0.483 | 14 | 4 | 97 | 9 |
| 44 | Dan BohmQB, DBHHS (Hastings on Hudson) | 833 | 92.6 | 73 | 124 | 0.589 | 9 | 7 | 80 | 9 |
| 45 | Matt ManciniQB, DEFonda-Fultonville (Fonda) | 827 | 206.8 | 48 | 88 | 0.545 | 11 | 2 | 117 | 4 |
| 46 | Bryan HaleQB, DBRiverhead | 824 | 103.0 | 62 | 114 | 0.544 | 10 | 5 | 88 | 8 |
| 47 | Rob PapiniQB, CBAMHS (Bardonia) | 819 | 91.0 | 56 | 116 | 0.483 | 8 | 9 | 62 | 9 |
| 48 | John HurleyQB, LBO'Neill (Highland Falls) | 817 | 90.8 | 36 | 62 | 0.581 | 6 | 9 | 95 | 9 |
| 49 | Nick DeljudiceQBPRHS (Staten Island) | 813 | 116.1 | 57 | 94 | 0.606 | 9 | 6 | 94 | 7 |
| 50 | Christopher GiorgioQB, DBHarrison | 811 | 67.6 | 43 | 95 | 0.453 | 11 | 1 | 110 | 12 |