| 1 | Tim RommelQB, DBHenninger (Syracuse) | 2245 | 249.4 | 115 | 182 | 0.632 | 21 | 12 | 117 | 9 |
| 2 | Jeremiah CrumityQB, DBMarshall (Rochester) | 2116 | 176.3 | 87 | 214 | 0.407 | 19 | 12 | 83 | 12 |
| 3 | Jelani WoseleyQBNew Dorp (Staten Island) | 1847 | 184.7 | 131 | 214 | 0.612 | 18 | 4 | 109 | 10 |
| 4 | Neal DottererQB, DBERGHS (East Rochester) | 1831 | 203.4 | 102 | 209 | 0.488 | 19 | 8 | 94 | 9 |
| 5 | Pat KeeganQBMarcellus | 1812 | 201.3 | 136 | 259 | 0.525 | 13 | 8 | 79 | 9 |
| 6 | Sean McVickerQBFordham Prep (Bronx) | 1724 | 143.7 | 114 | 214 | 0.533 | 17 | 10 | 87 | 12 |
| 7 | Jeffrey LegreeQB, DBFort Hamilton (Brooklyn) | 1718 | 143.2 | 98 | 151 | 0.649 | 16 | 2 | 133 | 12 |
| 8 | Justin MyersQB, MLBIrvington | 1696 | 188.4 | 101 | 182 | 0.555 | 13 | 10 | 88 | 9 |
| 9 | Terrence MooneyQBHHHS (New York) | 1628 | 180.9 | 105 | 176 | 0.597 | 24 | 2 | 125 | 9 |
| 10 | J BradyQBSt. Anthony's (Melville) | 1573 | 157.3 | 78 | 137 | 0.569 | 10 | 5 | 106 | 10 |
| 11 | Ryan CarpenterQB, DBFort Edward | 1504 | 167.1 | 58 | 112 | 0.518 | 20 | 6 | 115 | 9 |
| 12 | Sean MaraQBIona Prep (New Rochelle) | 1443 | 144.3 | 117 | 224 | 0.522 | 11 | 6 | 78 | 10 |
| 13 | Mike MathewsQB, DBFox Lane (Bedford) | 1425 | 142.5 | 74 | 132 | 0.561 | 19 | 8 | 108 | 10 |
| 14 | Mike ArmstrongQB, DBNewfield | 1301 | 144.6 | 93 | 165 | 0.564 | 12 | 11 | 78 | 9 |
| 15 | Cody KyserQB, CBWestfield | 1298 | 144.2 | 97 | 178 | 0.545 | 13 | 7 | 86 | 9 |
| 16 | Jim MoloneySWHS (Lake Huntington) | 1286 | 142.9 | 76 | 148 | 0.514 | 11 | 5 | 92 | 9 |
| 17 | Jon Anthony WiltbergerQB, DBKenmore East (Tonawanda) | 1283 | 142.6 | 105 | 195 | 0.538 | 16 | 13 | 74 | 9 |
| 18 | Robert McKerrowQB, DBWCVHS (Newport) | 1234 | 137.1 | 94 | 183 | 0.514 | 7 | 11 | 61 | 9 |
| 19 | Chris LoganQB, DBOceanside | 1221 | 152.6 | 68 | 138 | 0.493 | 14 | 7 | 93 | 8 |
| 20 | Max EinhornQB, DBEdgemont (Scarsdale) | 1213 | 134.8 | 50 | 80 | 0.625 | 9 | 4 | 123 | 9 |
| 21 | Rob ZappiaQB, SGreece Athena (Rochester) | 1208 | 151.0 | 78 | 148 | 0.527 | 14 | 5 | 97 | 8 |
| 22 | T.J. KilcarrQB, SCSHS (West Nyack) | 1205 | 133.9 | 79 | 163 | 0.485 | 14 | 9 | 79 | 9 |
| 23 | Gary SchmelzureQBSt. Mary's (Lancaster) | 1193 | 132.6 | 110 | 194 | 0.567 | 11 | 7 | 79 | 9 |
| 24 | Nick CampoAmsterdam | 1162 | 129.1 | 101 | 166 | 0.608 | 10 | 6 | 87 | 9 |
| 25 | Larry GrantQB, DBWoodlands (Hartsdale) | 1149 | 143.6 | 70 | 157 | 0.446 | 6 | 10 | 56 | 8 |
| 26 | Jake CarocciQB, DBBGHS (East Syracuse) | 1136 | 142.0 | 64 | 119 | 0.538 | 10 | 9 | 83 | 8 |
| 27 | Ryan KramerQB, WROneida | 1114 | 123.8 | 81 | 154 | 0.526 | 11 | 6 | 84 | 9 |
| 28 | Kevin StockelQB, CJohn Jay (Cross River) | 1061 | 117.9 | 64 | 106 | 0.604 | 7 | 4 | 100 | 9 |
| 29 | Parker UmbraQB, CBSidney | 1052 | 95.6 | 59 | 133 | 0.444 | 8 | 5 | 76 | 11 |
| 30 | Pat LymanQB, FSAAB (Albany) | 1030 | 93.6 | 67 | 112 | 0.598 | 10 | 9 | 87 | 11 |
| 31 | Whisly LaurentQB, DBMidwood (Brooklyn) | 1021 | 92.8 | 58 | 116 | 0.500 | 16 | 11 | 80 | 11 |
| 32 | Jones TyleekQBGrady (Brooklyn) | 990 | 99.0 | 41 | 79 | 0.519 | 10 | 4 | 116 | 10 |
| 33 | Fran ArchibaldQB, DERye | 966 | 87.8 | 63 | 109 | 0.578 | 10 | 10 | 80 | 11 |
| 34 | Chris MeinhardtQBWarwick | 957 | 106.3 | 49 | 118 | 0.415 | 14 | 10 | 75 | 9 |
| 35 | Clinton McCabeQBPoughkeepsie | 955 | 106.1 | 64 | 119 | 0.538 | 8 | 6 | 82 | 9 |
| 36 | Jason PelletierQBSuffern | 946 | 118.2 | 78 | 139 | 0.561 | 3 | 3 | 75 | 8 |
| 37 | Nick MainieroQB, DBCHHS (Croton on Hudson) | 946 | 105.1 | 58 | 96 | 0.604 | 7 | 4 | 100 | 9 |
| 38 | Cody TroutmanQB, FSPVCHS (South Dayton) | 935 | 133.6 | 63 | 138 | 0.457 | 1 | 11 | 38 | 7 |
| 39 | Steve BiernackiQB, DBMedina | 931 | 93.1 | 51 | 118 | 0.432 | 10 | 8 | 71 | 10 |
| 40 | Emil ChamblissQB, DBLincoln (Brooklyn) | 925 | 102.8 | 89 | 146 | 0.610 | 7 | 8 | 72 | 9 |
| 41 | Arthur MullerQBSTTHS (Yonkers) | 920 | 102.2 | 53 | 122 | 0.434 | 8 | 15 | 52 | 9 |
| 42 | Peter FishmanQB, DBHHS (Hastings on Hudson) | 910 | 101.1 | 67 | 132 | 0.508 | 14 | 9 | 80 | 9 |
| 43 | Christopher CalabreseQBXaverian (Brooklyn) | 909 | 82.6 | 72 | 133 | 0.541 | 7 | 5 | 78 | 11 |
| 44 | Joseph MelendezQB, RBTuckahoe (Eastchester) | 885 | 80.5 | 82 | 126 | 0.651 | 8 | 8 | 80 | 11 |
| 45 | Jarod HenkelQBLa Salle Institute (Troy) | 874 | 97.1 | 65 | 141 | 0.461 | 7 | 8 | 59 | 9 |
| 46 | Bunduka KargboQB, DBBishop Maginn (Albany) | 869 | 96.6 | 60 | 126 | 0.476 | 9 | 8 | 68 | 9 |
| 47 | Jeff MarcyQB, SLetchworth (Gainesville) | 869 | 86.9 | 47 | 105 | 0.448 | 6 | 4 | 77 | 10 |
| 48 | Sean McGinnQB, CBPalmyra-Macedon (Palmyra) | 835 | 104.4 | 59 | 102 | 0.578 | 4 | 3 | 85 | 8 |
| 49 | Wesley JacksonQB, DBProctor (Utica) | 831 | 103.9 | 52 | 104 | 0.500 | 8 | 5 | 83 | 8 |
| 50 | Maxwell BarrettQB, CBAvon | 822 | 91.3 | 62 | 157 | 0.395 | 8 | 10 | 47 | 9 |