| 1 | Brad TrimmQBBGHS (East Syracuse) | 2444 | 271.6 | 195 | 331 | 0.589 | 21 | 18 | 80 | 9 |
| 2 | Ahmed HassanienQBBinghamton | 2260 | 226.0 | 161 | 287 | 0.561 | 20 | 12 | 87 | 10 |
| 3 | Ryan O'NeilQBIona Prep (New Rochelle) | 2227 | 222.7 | 188 | 290 | 0.648 | 20 | 6 | 102 | 10 |
| 4 | Will FiacchiQB, DBMarcellus | 2176 | 241.8 | 164 | 266 | 0.617 | 25 | 11 | 102 | 9 |
| 5 | Frank SinagraQB, DENew Utrecht (Brooklyn) | 1940 | 161.7 | 123 | 220 | 0.559 | 24 | 9 | 105 | 12 |
| 6 | Neal DottererQB, FSERGHS (East Rochester) | 1939 | 242.4 | 121 | 199 | 0.608 | 15 | 13 | 91 | 8 |
| 7 | Justin MyersQB, DBIrvington | 1913 | 212.6 | 109 | 192 | 0.568 | 14 | 10 | 94 | 9 |
| 8 | Mike DaumQB, DBBeacon | 1863 | 207.0 | 139 | 283 | 0.491 | 19 | 3 | 88 | 9 |
| 9 | Joe NussQBCKHS (Middle Village) | 1706 | 155.1 | 107 | 250 | 0.428 | 14 | 9 | 70 | 11 |
| 10 | Sean BradyQB, DBCanisius (Buffalo) | 1681 | 168.1 | 86 | 177 | 0.486 | 19 | 15 | 83 | 10 |
| 11 | Chris BockletQB, DBJohn Jay (Cross River) | 1669 | 166.9 | 113 | 183 | 0.617 | 13 | 9 | 95 | 10 |
| 12 | Jarod HenkelQBLa Salle Institute (Troy) | 1596 | 145.1 | 102 | 160 | 0.638 | 14 | 11 | 97 | 11 |
| 13 | Ryan ShillingCarmel | 1557 | 194.6 | 94 | 176 | 0.534 | 20 | 5 | 109 | 8 |
| 14 | T.j. KilcarrQB, SCSHS (West Nyack) | 1486 | 148.6 | 101 | 180 | 0.561 | 14 | 7 | 93 | 10 |
| 15 | Ryan KramerQB, DBOneida | 1424 | 158.2 | 98 | 197 | 0.497 | 13 | 3 | 89 | 9 |
| 16 | Aaron KilnerQB, TEO'Neill (Highland Falls) | 1415 | 157.2 | 55 | 143 | 0.385 | 16 | 10 | 84 | 9 |
| 17 | Jordan EckQB, SRye | 1414 | 117.8 | 90 | 144 | 0.625 | 16 | 4 | 121 | 12 |
| 18 | Dave BoistureQB, DBCCHS (New Windsor) | 1389 | 126.3 | 100 | 179 | 0.559 | 15 | 8 | 90 | 11 |
| 19 | Brian McDonaldQB, FSAAB (Albany) | 1364 | 151.6 | 96 | 165 | 0.582 | 12 | 8 | 89 | 9 |
| 20 | Robert McKerrowQB, DBWCVHS (Newport) | 1363 | 151.4 | 89 | 149 | 0.597 | 12 | 4 | 106 | 9 |
| 21 | Joey SchleeQBNewfield (Selden) | 1361 | 170.1 | 90 | 162 | 0.556 | 11 | 5 | 93 | 8 |
| 22 | James BradyQBSt. Anthony's (Melville) | 1360 | 123.6 | 81 | 152 | 0.533 | 8 | 3 | 93 | 11 |
| 23 | Kevin SteinruckQB, DBWayne (Ontario Center) | 1297 | 144.1 | 87 | 185 | 0.470 | 3 | 10 | 53 | 9 |
| 24 | Najee TylerQBXaverian (Brooklyn) | 1276 | 141.8 | 104 | 198 | 0.525 | 9 | 11 | 65 | 9 |
| 25 | Joel MillerQB, DBIrondequoit (Rochester) | 1215 | 135.0 | 96 | 183 | 0.525 | 6 | 4 | 75 | 9 |
| 26 | Jon Anthony WiltbergerQB, DBKenmore East (Tonawanda) | 1198 | 119.8 | 97 | 188 | 0.516 | 12 | 8 | 75 | 10 |
| 27 | Jeffrey LegreeQBFort Hamilton (Brooklyn) | 1168 | 129.8 | 60 | 145 | 0.414 | 12 | 6 | 80 | 9 |
| 28 | Jack SulloQB, SHicksville | 1159 | 165.6 | 71 | 128 | 0.555 | 11 | 5 | 98 | 7 |
| 29 | Ethan KreiselAmsterdam | 1148 | 127.6 | 76 | 117 | 0.650 | 12 | 5 | 113 | 9 |
| 30 | Thomas HeedlesQB, CBNew Dorp (Staten Island) | 1137 | 103.4 | 101 | 183 | 0.552 | 11 | 6 | 80 | 11 |
| 31 | Lawrence DesimoneQBFordham Prep (Bronx) | 1131 | 141.4 | 65 | 122 | 0.533 | 10 | 7 | 89 | 8 |
| 32 | Bunduka KargboQB, FSBishop Maginn (Albany) | 1129 | 125.4 | 67 | 156 | 0.429 | 10 | 5 | 76 | 9 |
| 33 | Joseph CollinsQB, SASHS (White Plains) | 1096 | 91.3 | 71 | 139 | 0.511 | 14 | 8 | 87 | 12 |
| 34 | Ken MatosQB, FSAMHS (Bardonia) | 1090 | 109.0 | 78 | 144 | 0.542 | 11 | 7 | 84 | 10 |
| 35 | Kelly OlneyQB, DBProctor (Utica) | 1075 | 134.4 | 78 | 149 | 0.523 | 8 | 9 | 68 | 8 |
| 36 | Clinton McCabeQBPoughkeepsie | 1060 | 132.5 | 64 | 132 | 0.485 | 9 | 7 | 77 | 8 |
| 37 | David MandelbaumQB, DBEdgemont (Scarsdale) | 1056 | 117.3 | 64 | 137 | 0.467 | 9 | 0 | 95 | 9 |
| 38 | Tom SeckyQB, KMaple Grove (Bemus Point) | 1047 | 149.6 | 60 | 80 | 0.750 | 18 | 3 | 141 | 7 |
| 39 | Mike MathewsQB, DBFox Lane (Bedford) | 1030 | 128.8 | 65 | 129 | 0.504 | 10 | 5 | 87 | 8 |
| 40 | Justin KreamerQB, DBOssining | 1021 | 85.1 | 48 | 115 | 0.417 | 8 | 9 | 64 | 12 |
| 41 | Travis FenstermakerQB, DBLe Roy | 1005 | 83.8 | 69 | 117 | 0.590 | 17 | 2 | 119 | 12 |
| 42 | Sam HiggsWR, QBBKHS (Rochester) | 1004 | 111.6 | 45 | 90 | 0.500 | 12 | 10 | 90 | 9 |
| 43 | Terence MooneyQBHHHS (New York) | 1003 | 125.4 | 51 | 93 | 0.548 | 10 | 3 | 115 | 8 |
| 44 | Craig GeoghanQBSNHS (Lake Ronkonkoma) | 993 | 141.9 | 81 | 109 | 0.743 | 7 | 4 | 108 | 7 |
| 45 | Elijah ChapmanQB, DBLincoln (Brooklyn) | 986 | 140.9 | 55 | 102 | 0.539 | 12 | 4 | 110 | 7 |
| 46 | Kris JenkinsQB, DBWoodlands (Hartsdale) | 975 | 121.9 | 86 | 131 | 0.656 | 5 | 4 | 88 | 8 |
| 47 | Joe TretterQB, DEAkron | 962 | 106.9 | 42 | 81 | 0.519 | 0 | 9 | 55 | 9 |
| 48 | Rob LaCollaQBOLLHS (Poughkeepsie) | 960 | 137.1 | 81 | 149 | 0.544 | 8 | 10 | 64 | 7 |
| 49 | Tom MilburnQB, LBWarwick | 958 | 136.9 | 52 | 117 | 0.444 | 10 | 8 | 73 | 7 |
| 50 | Mike FasanoQBNorth Rockland (Thiells) | 954 | 106.0 | 78 | 126 | 0.619 | 6 | 4 | 88 | 9 |