| # | Name | Yds | Yds/G | Comp | Att | Pct | TD | Int | Rate | GP |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Greg PaulusQBCBA (Syracuse) | 3677 | 282.8 | 229 | 349 | 0.656 | 43 | 0 | 140 | 13 |
| 2 | Devin BlessingQB, DBOneida | 1564 | 156.4 | 87 | 187 | 0.465 | 24 | 12 | 89 | 10 |
| 3 | Nick McRorieQB, DBSVHS (Sauquoit) | 1272 | 141.3 | 66 | 125 | 0.528 | 17 | 9 | 98 | 9 |
| 4 | Kevin KliszczeweizQBLiverpool | 661 | 110.2 | 41 | 85 | 0.482 | 7 | 4 | 83 | 6 |
| 5 | John ThomasQB, DBJordan-Elbridge (Jordan) | 599 | 66.6 | 37 | 86 | 0.430 | 3 | 0 | 79 | 9 |
| 6 | Nick TestaQB, LBFSHS (Frankfort) | 594 | 74.2 | 50 | 85 | 0.588 | 7 | 4 | 88 | 8 |
| 7 | Zach DoldoQB, SIHCHS (Watertown) | 580 | 72.5 | 54 | 113 | 0.478 | 3 | 8 | 43 | 8 |
| 8 | Alex SmithQBCentral Square | 505 | 84.2 | 34 | 50 | 0.680 | 2 | 2 | 98 | 6 |
| 9 | Jodey McAvoyQB, DBGeneral Brown (Dexter) | 209 | 41.8 | 26 | 52 | 0.500 | 3 | 1 | 72 | 5 |
| 10 | Eddie HullQB, LBCentral Square | 123 | 15.4 | 15 | 20 | 0.750 | 19 | 37 | 90 | 8 |
| 11 | Scott KraegerQB, SSouth Lewis (Turin) | 119 | 29.8 | 10 | 33 | 0.303 | 0 | 2 | 17 | 4 |
| 12 | Donato SpinaFB, MLBSVHS (Sauquoit) | 72 | 8.0 | 2 | 2 | 1.000 | 0 | 0 | 138 | 9 |
| 13 | Mat KiresFB, LBCentral Square | 52 | 5.8 | 1 | 3 | 0.333 | 1 | 0 | 122 | 9 |
| 14 | Chris BushQB, FSCooperstown | 49 | 6.1 | 6 | 9 | 0.667 | 2 | 0 | 120 | 8 |
| 15 | Fred BushTB, LBJordan-Elbridge (Jordan) | 45 | 5.0 | 1 | 1 | 1.000 | 1 | 0 | 177 | 9 |
| 16 | Jarred BarrQB, DBFSHS (Frankfort) | 38 | 4.8 | 2 | 5 | 0.400 | 0 | 0 | 67 | 8 |
| 17 | Tim HudsonQB, LBOneida | 37 | 4.1 | 3 | 4 | 0.750 | 1 | 0 | 143 | 9 |
| 18 | Geno LatellaRB, LBFSHS (Frankfort) | 11 | 1.4 | 1 | 2 | 0.500 | 1 | 1 | 67 | 8 |
| 19 | Daniel FiorentinoWR, DBFSHS (Frankfort) | 9 | 1.1 | 1 | 1 | 1.000 | 1 | 0 | 162 | 8 |
| 20 | Mike BuckenmeyerQBLiverpool | 1 | 0.2 | 2 | 2 | 1.000 | 0 | 0 | 98 | 4 |