| 1 | Mario GuilinP, SSPVVHS (Blythe) | 120 | 33 | 75.0 | 24 |
| 2 | Ricardo PecinaP, 1BMadison (San Diego) | 106 | 276 | 65.0 | 26 |
| 3 | Julian ArballoP, RFSouthwest EC (El Centro) | 97 | 240 | 61.2 | 19 |
| 4 | Vidal NunoP, CFSHS (National City) | 94 | 0 | 90.1 | 30 |
| 5 | Mitchell WygantP, CFFCHS (El Cajon) | 76 | 211 | 45.0 | 18 |
| 6 | Mark TrioloP, OFPatrick Henry (San Diego) | 76 | 310 | 69.2 | 32 |
| 7 | Roman PeñaP, CFMontgomery (San Diego) | 76 | 269 | 64.1 | 32 |
| 8 | James Boerner3B, PImperial | 75 | 294 | 70.0 | 27 |
| 9 | Cameron AspaasPSan Marcos | 70 | 289 | 65.1 | 17 |
| 10 | David Galindo3B, PSHS (National City) | 70 | 0 | 73.2 | 30 |
| 11 | McCullough DeanPVista | 68 | 211 | 47.2 | 10 |
| 12 | Kevin SoaresPCCHS (San Diego) | 68 | 0 | 71.0 | 17 |
| 13 | Wayde KitchensPVista | 65 | 193 | 46.0 | 19 |
| 14 | Allen CoonsP, SSHTCHS (San Diego) | 65 | 249 | 53.2 | 24 |
| 15 | Dante LoveC, PCrawford (San Diego) | 64 | 300 | 69.0 | 23 |
| 16 | Brad McAteePPoway | 63 | 0 | 67.1 | 15 |
| 17 | Josh HayesP, OFPatrick Henry (San Diego) | 62 | 287 | 62.0 | 23 |
| 18 | Ryan VandewieleP, 1BOceanside | 62 | 261 | 65.2 | 32 |
| 19 | Roberto RodriquezP, OFPoint Loma (San Diego) | 61 | 224 | 50.0 | 18 |
| 20 | Lance McCormickP, 1BMadison (San Diego) | 61 | 271 | 69.2 | 26 |
| 21 | Daniel EreceOF, 1BHilltop (Chula Vista) | 59 | 273 | 63.0 | 31 |
| 22 | Steve BrunstPOceanside | 58 | 297 | 70.0 | 16 |
| 23 | Joshua PattonSS, PSouthwest EC (El Centro) | 58 | 170 | 54.1 | 21 |
| 24 | Evan SmithC, PFPHS (San Diego) | 56 | 290 | 52.0 | 25 |
| 25 | Steven WinnickSS, PHCA (San Diego) | 55 | 141 | 39.0 | 22 |
| 26 | Gilbert SolisP, SSHTCHS (San Diego) | 55 | 190 | 44.0 | 24 |
| 27 | Tim MurphyOF, PRBVHS (Vista) | 55 | 220 | 47.2 | 33 |
| 28 | John DillonP, 1BTCCHS (Vista) | 54 | 279 | 58.1 | 20 |
| 29 | Reid SuitorPTorrey Pines (San Diego) | 52 | 245 | 56.1 | 12 |
| 30 | Michael CruzP, 3BSan Marcos | 52 | 307 | 69.2 | 19 |
| 31 | James MeadorP, INFRamona | 51 | 0 | 67.0 | 20 |
| 32 | Alek DiachenkoP, OFCCHS (San Diego) | 50 | 0 | 65.1 | 32 |
| 33 | Steven RegnerRHP, 1BHCA (San Diego) | 49 | 293 | 74.0 | 22 |
| 34 | Robert RehbergerP, INFSFCHS (Solana Beach) | 49 | 309 | 73.1 | 24 |
| 35 | Russell HavensP, SSImperial | 49 | 271 | 65.1 | 27 |
| 36 | Gustavo GonzalesP, 1BCalexico | 46 | 225 | 49.1 | 18 |
| 37 | Jason LewisP, OFVista | 46 | 217 | 48.2 | 23 |
| 38 | Joel HilfikerP, OFHoltville | 46 | 291 | 48.0 | 25 |
| 39 | Jose NunezP, 1BHoltville | 45 | 264 | 50.1 | 21 |
| 40 | Cody Cantabrana1B, PCarlsbad | 45 | 190 | 53.2 | 28 |
| 41 | David GuillentP, OFHCA (San Diego) | 44 | 234 | 55.2 | 25 |
| 42 | Xavier Scruggs3B, PPoway | 44 | 0 | 48.2 | 34 |
| 43 | Tyler MabryPFPHS (San Diego) | 42 | 216 | 47.2 | 14 |
| 44 | Myles Muckelroy2B, PHTCHS (San Diego) | 42 | 181 | 36.2 | 24 |
| 45 | Tony WestendorfP, RFMVHS (Imperial Beach) | 42 | 201 | 42.2 | 25 |
| 46 | James McLaughlinP, OFTorrey Pines (San Diego) | 42 | 227 | 49.1 | 29 |
| 47 | Thomas Dapperrt2BMEHS (Pine Valley) | 40 | 200 | 42.1 | 21 |
| 48 | Matt WiegandP, 1BLa Jolla | 40 | 291 | 58.0 | 26 |
| 49 | Brian KirwanPSFCHS (Solana Beach) | 37 | 99 | 24.1 | 6 |
| 50 | Tyson TaylorRHPScripps Ranch (San Diego) | 37 | 306 | 66.0 | 14 |
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